rs33550646 SNP Detail

Summary

• ID
  rs33550646
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:89085035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTAACAA AGCAAACAAA
  GAAAAGATAA CACAAAGACC CTTTATCTAT GGAGTACTAC AAAACAAATG TAAAAAATAA
  GGAGAGCTAT TTCAATGATT TGTACTGTGA CACAAAAGAA TTTTATAAGT ATTAGGTACA
  ATAGAGACAG AATGGGACAG TCTTAAATGC AGTATCAGAA TTTCATGTTA AAGACTTGTG
  R
  TTTGACCATG ACATCCTGAG ATGATAAGCA CAATTATCTC CAGTTATGCA GCGTTGTTTG
  GTCAGTAAAC TATGAAACCC TGATGTTTTC TGAGGCACAG TGGAGACATG TGACATTTTA
  ATGCCTGTGG TTTTCTCCAC CAAACTCCCA GGTATATAAG AGGTCTTTGT CAGCTGATGA
  CAACCAGACG CAAGGATCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48326727	NES12206799	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33550646					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48326727	NES12206799	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:89085035 () rs orientation: forward

Symbol	Name	Function Class
Gm33084	predicted gene, 33084	239 bp upstream
Tssr139267	transcription start site region 139267	180 bp upstream