rs33551978 SNP Detail

Summary

• ID
  rs33551978
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172186966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCAAGTCC CCAGGCAGTG
  CATAGTCACC AGGTAAGAGA GAGTGCCCTC TTGTCAGATT TTAGTCCGAC AGAAATGTGA
  GTCTTTGCTT CTCTTGAGAC ACTATGGGAG CGGAGTTGCT GACCAACCTG GTTTGTGTAC
  TTTTAACTAT CTGTGAAAGT ACAAAACTTT TCTCCACAGT GGCTGCTTTC ATGTTCACAG
  S
  CGCGATATAG TAGGCTCATT TAGAGGGCTT CTTCAAGTGA GAGTTAACCT CTATAGTTCC
  TTTCTTCTTT AAAGCATTCA CGTAAGCATC AGTCTTCCAG GTTTCACCCA TTCGGCTGAG
  AGGAAAAACA AAGAATGCAT TAGCCCTCGC TTGAAACAGC CGCCAGCCGC GCTCCACAGT
  CCGGAAACTC AAAATCCTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45292621	mCV25119507	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
ss148313988	ENSMUSSNP4340242	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320618202	CHEV_2_172170546	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33551978					SNP	G	G	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172186966 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12819	CpG island 12819	269 bp proximal
Fam210b	family with sequence similarity 210, member B	519 bp upstream
Rr56171	regulatory region 56171	within coordinates
Tssr21944	transcription start site region 21944	533 bp upstream
Tssr21945	transcription start site region 21945	549 bp upstream
Tssr21946	transcription start site region 21946	582 bp upstream
Tssr27939	transcription start site region 27939	624 bp downstream