rs33552188 SNP Detail

Summary

• ID
  rs33552188
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:103573070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCAGGGTCC CGGACCTGCG GTCCTGTCCG CGCGCGGGCG
  GGGTTGACTG ACAGGGCAAG GGGCGGGGCC GATGCGTCGG GCCGAGGAGG AGCTGCGCGC
  M
  GTGAGGAGCT GGGCCGGGCG CGCCGCGGCG AGGGTGACAC ACCATGGTCA CAGTTCTCCG
  AGGTCTCCGC GCCGCTGCCG AGCAGCGCTC CCCGGCTCT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45792559	mCV24430826	ABI	CRAMUS_MOUSE	f	SNP	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33552188					SNP	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:103573070 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16135	CpG island 16135	within coordinates
Ptpn13	protein tyrosine phosphatase, non-receptor type 13	within coordinates
Tssr47557	transcription start site region 47557	7 bp downstream
Tssr47558	transcription start site region 47558	within coordinates
Tssr47559	transcription start site region 47559	29 bp upstream
Tssr52160	transcription start site region 52160	516 bp downstream
Tssr52161	transcription start site region 52161	544 bp downstream