rs33552692 SNP Detail

Summary

• ID
  rs33552692
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:3332381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAATTTC TGGGAGTCAA
  CTGTGCCACA GGTGCTGGTA AAAAGCTGCC CAACATTTGG AGATGTTGAT GTGAGGCAGG
  TGGCATCTCC AGACTGCACG GCCTTTGGAG ATGGTGTTGC ACTCACTCCC AGTAAGAGCT
  GCAATCTTGA TTCTGTCAGT GCTGCCCACT GCTACAGACA CTGGCTATAG CTGCTTCCAT
  R
  ATAACTGCTT CCATCAATCC CCATGAGCTG CATGCTCCTC ACAAGCTAAG AGATTCAAGA
  ACAGGTCGTC CAAATCTATC GAGGTGACCA GCAGCTGGTA GCTAGCTTTG AGTAAAATGA
  CCAGGAAGCA AGGGACAAAT GGTCCCACCA CAACGCTTGC CAAACTGCAA GTCAGCTACT
  GTCCCTGCCT AGCATGGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45292446	mCV27554302	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss146261291	ENSMUSSNP4603398	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33552692					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3332381 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11150	CpG island 11150			835 bp proximal
Rpp38	ribonuclease P/MRP 38 subunit			Intron
				mRNA-UTR
Rr396749	regulatory region 396749			1191 bp upstream
Rr550889	regulatory region 550889			within coordinates
Rr550890	regulatory region 550890			1289 bp proximal
Tssr15888	transcription start site region 15888			1814 bp upstream
Tssr22355	transcription start site region 22355			1079 bp downstream
Tssr22356	transcription start site region 22356			1103 bp downstream
Tssr22357	transcription start site region 22357			1222 bp downstream