rs33553033 SNP Detail

Summary

• ID
  rs33553033
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46043431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAA TGAGAAAATG CATAGGTGTT
  Y
  TGGAGCTCTC TCCCAGCATG CCTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39550250	mCV24294030	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss145695580	ENSMUSSNP13987	ENSEMBL	ENSEMBL_Sanger	f	SNP				C
ss325403971	CHEV_17_45869454	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33553033					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46043431 () rs orientation: forward

Symbol	Name	Function Class
1600014C23Rik	RIKEN cDNA 1600014C23 gene	359 bp downstream
BE949265	cDNA sequence BE949265	287 bp downstream
Cpgi9207	CpG island 9207	1003 bp proximal
Rr331489	regulatory region 331489	631 bp distal
Rr339882	regulatory region 339882	769 bp proximal
Tssr148277	transcription start site region 148277	1338 bp downstream