rs33553305 SNP Detail

Summary

• ID
  rs33553305
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123366568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GCGCGTTGGC TGAGCTGTTT TGGCCCCGGG GAGGACCCGT AGCCTCAGCC TCGGCTGGCG
  TCCGTAGCCG GGAAACCCAG AACTCTAGCT TGAGGTCCGC GATGTCGGGT GAAGACGTTC
  CGCACCGGGC AGAGTCCTCC GAGGCCCGTG CGGCCGCGGT CAGCGACATC CAGGATCTGA
  TGCGACGCAA GGAGGAGATC GAGGCGGAGA TCAAGGCTAA TTACGACGTC CTGGAGAGCG
  TGAGTGTGGC GGGGAGGCCT GCGGACGAGG CTCGGGGTCG CTGCCAAGCA GTGTCCTAGG
  R
  GGGGGTCTTT GCTGCGTGCC ACACGCCCCT TTAAGCATTT TTTCTTTACG TGGGATTAAT
  TTTCATTTTC GGAAGCATTA ACTTTGCATT TTAAAGTTTT TTGTTTGTTT GTTTTTAACG
  CAGCCCCTAA GCTGGCTTCG AACTCGTGAT CCTCCTGCTT CATCTTTCTG AGTGCGGGAA
  TCGCGGGCCT GTGCAACCAT GATATAGGCC TTAGTGAAAC TGCCTCGGTC GCAAGGATAG
  ACTATTTGCT GAGGCATAGT GATAATCGCT ACTGTCACTT TCTGTAGGTG ACATTACCAG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45792572	mCV25107599	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss149193631	ENSMUSSNP6606177	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33553305					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123366568 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16580	CpG island 16580	within coordinates
Psmd9	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	within coordinates
Rr124341	regulatory region 124341	within coordinates
Rr399344	regulatory region 399344	134 bp downstream
Tssr48774	transcription start site region 48774	278 bp downstream
Tssr48775	transcription start site region 48775	204 bp downstream