rs33553462 SNP Detail

Summary

• ID
  rs33553462
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85919131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGG CTTCCTGTAC ATCTCTGTGC
  R
  TGTCTGGGCG TCACTCCAAG CGGAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39550150	mCV23053486	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss146152507	ENSMUSSNP3738437	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33553462					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85919131 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9587	CpG island 9587	953 bp proximal
Cpgi9588	CpG island 9588	1901 bp proximal
Gm55781	predicted gene, 55781	within coordinates
Gm55782	predicted gene, 55782	1679 bp upstream
Six3	sine oculis-related homeobox 3	1905 bp upstream
Six3os1	SIX homeobox 3, opposite strand 1	within coordinates
Tssr146084	transcription start site region 146084	1523 bp upstream
Tssr146085	transcription start site region 146085	1729 bp upstream
Tssr149705	transcription start site region 149705	628 bp downstream
Tssr149706	transcription start site region 149706	1351 bp downstream