rs33553780 SNP Detail

Summary

• ID
  rs33553780
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:96083361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGA CACATACACC TGGGAACCAC
  S
  TGGAGACACA AGGAGCCCAG CTCCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46290056	mCV22583389	ABI	CRAMUS_MOUSE	f	SNP		G	G					C		G
ss60651662	NES16269006	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	C	G		C	G	G	C		G	C	G	C		C
ss145643169	ENSMUSSNP563689	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							G
ss322811420	CHEV_8_97880633	CHEVERUD	SCREENING_POP	f	SNP													C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33553780					SNP	G	G	G	G	G	C	G	C	C	G	G	C	C	G	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60651662	NES16269006	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:96083361 () rs orientation: forward

Symbol	Name	Function Class
Mmp15	matrix metallopeptidase 15	within coordinates
Rr1960	regulatory region 1960	1941 bp proximal
Rr668228	regulatory region 668228	428 bp proximal
Rr668229	regulatory region 668229	1704 bp proximal