rs33554408 SNP Detail

Summary

• ID
  rs33554408
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:142329609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATCACTTA TTAAAACCAC
  AGCTGGATAT TTTTACAAAA ATTAACAAAC TAACACGCTG GGGAAAATAT AAAAGATCCA
  AAATAATCAA ATCAAACAAT AATCAAAAGA ACTTAGAAAG ATAAAAGACC AAAATTAGAT
  GGCTTACACT TCCCAATTTC AGAATTTACT GTGAAGCTAA AATAATCAAG ACTGTGGTAT
  S
  AGCACAAGAA TGAGACTGCA TTTCAAAAAT TAAGCCTCCC ATCCACAGTT TGCTTTTTAC
  AATGATGCTA ATAAAATTTA ATAGAGAAAG AATAATATCT TCAAAAGAAC TGTATATCCA
  CAGTGAAAAG AGTAAAATTG AATCCTTACC ATATACCATG TTACAAAATT AACTCGAAAT
  GAATCCAAAA CCTAAATGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45291583	mCV22352596	ABI	CRAMUS_MOUSE	f	SNP	C	G	C
ss147732304	ENSMUSSNP3215232	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss320531579	CHEV_2_142313425	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33554408					SNP	C	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:142329609 () rs orientation: forward

Symbol	Name	Function Class
Rr566216	regulatory region 566216	1685 bp distal