rs33554902 SNP Detail

Summary

• ID
  rs33554902
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:166523635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTACATTTT ACACATAGAT GTTTAGTATA CATACTACAT
  AGGGGTGATT TTGGTTGGGT TTTTTTTTTT TTAATTTTGT TTGTGAGTGT GTTTGTGTCT
  S
  TGTGTGTGTC CCTTCTAATG AACTAAACTC AGGTCTTCAG GTTTATACAC CTTTTATTTT
  TCTGGGCCAT CTCCCAGACA GGCTGGGGGG TGTTGTTGC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45292759	mCV23066191	ABI	CRAMUS_MOUSE	f	SNP	C	G	C
ss148258095	ENSMUSSNP2183393	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33554902					SNP	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166523635 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm56395	predicted gene, 56395			359 bp upstream
Prex1	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1			Intron
				Noncoding-Transcript-Variant
Rr570342	regulatory region 570342			1843 bp distal
Rr570343	regulatory region 570343			1051 bp proximal
Rr570344	regulatory region 570344			1894 bp proximal