rs33555618 SNP Detail

Summary

• ID
  rs33555618
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24936261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGT GGGCATTACA GTGAGCTTTT
  Y
  GCTCCAAGCT GAAGCTAGGG ACTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39550078	mCV24348147	ABI	CRAMUS_MOUSE	f	SNP	C			T		C
ss60552594	NES16570686	PERLEGEN	MM_PANEL2	f	SNP		C	C		C		C		T	T	T		C
ss145361952	ENSMUSSNP3583464	ENSEMBL	ENSEMBL_Sanger	f	SNP	C					C
ss325333210	CHEV_17_24854232	CHEVERUD	SCREENING_POP	f	SNP								C				C
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33555618					SNP	C	C	C	T	C	C	C	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60552594	NES16570686	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24936261 () rs orientation: forward

Symbol	Name	Function Class
Rnf151	ring finger protein 151	within coordinates
Rr339329	regulatory region 339329	1339 bp proximal
Tssr143066	transcription start site region 143066	801 bp upstream
Tssr146774	transcription start site region 146774	719 bp downstream
Tssr146775	transcription start site region 146775	764 bp downstream