rs33556587 SNP Detail

Summary

• ID
  rs33556587
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:96038269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAGTGAAACA GGCTGGGGTG AACCCAGCAG TTATCCCTAC CCTAATGTGG CCGGGTCACC
  TCTATAGAGC CCCAGTTCTG ACATTTTCCA AGATGCTTGG CTTATGTGGC TGCCATAGAG
  ACCCAGGGAA TAGATGTCCA GTGCCTAGGG ATCCTGGCAG CCTGTGTTGC CCAGGGTTAC
  CAGGAGCTTC GTCCTCACAA TCAGGTTGCA CTGGGCATTG TCTCTGTGAT GCTCCTTAGC
  CTGCAGTTGC CTGGAAGGCA CGCCCACATC CTTTCTTTTG CCCACTGAGC AGCAGGAGGA
  W
  AGACGGTTCT TACCTGCCTG TGCACTTGGG CCTGTGCCCT GCAGATGAGG TAGTGGCTAT
  GGGTAAATGG TAGCAGGGTG TTCTCTCTTC CTTTTTCTCT GTGTTCTACC ACTCCATCCT
  TCCTCATGGA GGGTCAACTC TGAGACAGCT TTTCCACTTT TTCTATCATG CCCCGTCCTG
  ATCCTTCATT ATAGTGAGAA TTTTGGAATC GTGGTTTCTT TTTTTTTTTA ATGCAGAAAT
  ATTTTAAGAA TGTGCTTTTA ATACCCAGGT GTAGGAATAT GGGGCTGCCT TGGACTGTCT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46290801	mCV22582122	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	T	T
ss145642378	ENSMUSSNP974881	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33556587					SNP	A	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:96038269 () rs orientation: forward

Symbol	Name	Function Class
Rr178911	regulatory region 178911	1132 bp proximal
Rr185768	regulatory region 185768	1265 bp proximal
Rr191307	regulatory region 191307	70 bp distal
Spmip8	sperm microtubule inner protein 8	within coordinates
Tssr2665	transcription start site region 2665	54 bp downstream
Tssr2666	transcription start site region 2666	14 bp downstream
Tssr2667	transcription start site region 2667	within coordinates