rs33556840 SNP Detail

Summary

• ID
  rs33556840
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:103754579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAATAATA TATGATACAT
  TATACTTTTA AACTTGGGTT GTTAGACCTG GCAGAAGCTG ACACCCCATG CCTCCTTCAC
  CCCTGCTCAT TTCTGTGTGC TGTTTATCTC ATAATCTCCC ACCCAGACCG CCATCCAGAC
  TACAAAACCA CAGCCTCTGA GCTTGTTTTG TCCTTTTTCC TCTAATCATA ATCATCTAAT
  Y
  GATCATTGTC ATTATTTCTT CCCTTTTGTC TCAATGCTTG CTAGAGATTT CAGTTGTTGT
  TGTTGTTGTT GTTTGGTTAT TTTCAGACAG AGTTTCTCTG TGTAGCCCTG GATGTCCTGG
  GACTTACTCT ATGGGCCAGG CTGGCCTCGA ACTCACAAAG ATCTGCCCGC CTCTGCCTCC
  AGAGTGCGAA GATTAAAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46827590	NES10713320	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33556840					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46827590	NES10713320	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:103754579 () rs orientation: forward

Symbol	Name	Function Class
Bcl2l15	BCLl2-like 15	within coordinates
Tssr31007	transcription start site region 31007	445 bp downstream
Tssr31008	transcription start site region 31008	408 bp downstream
Tssr31009	transcription start site region 31009	398 bp downstream
Tssr31010	transcription start site region 31010	361 bp downstream