rs33557311 SNP Detail

Summary

• ID
  rs33557311
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:49780403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATGTACCAGC AAGTCTTCAC ACACTATAAA CAATGTTGGG ACAGGCACCC TGTGCTGAGT
  ATGTGTGCCA TGCGGTAGGG CTGAATGCCC TGGATACCAA GAGCTAGCTG TGATTCAAAT
  TACTTTCAGG AAAATGGACC TCTGAGCTGG TCTCATTTCT TCAATTATAT TTTTTTACAG
  ATACCTGACA CTAAGCACAA TATAGCCAAA TGCCTTTCTT ACCTTCCCAG GCCTCCTTCT
  AGCTTCTCTC TTCCAAAATC TAAATTAGTT ACTTTCATTT CTACATCTAT TTTGTATTTG
  K
  TTATATTTAC ATCATAGTCT CAGTTTTCAG TTTGTCAATG TGCTTACTTT GCATTATCAT
  GCAAGGTAAG GGTTAGGAGA GTGGGTACTG GAATGGGTAG GTTTGAATCC CACCTCTGTT
  ACTTTCTGGG ATTCTGATAA ACTACAGACA TTGATTTCCC TCTAGCTTAC TGACTTCGTC
  AGTGATGTAA AGAGCTCTTA ACCCTACAAG CTAATAAAAA GAAGCTAACA CATGTAATAG
  GAGAAAGTGT CTTCGGCAAA AGATTAAGTT ACACGGTTTA TAAAAGCACA TTATTGTGGC
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45793261	mCV25455443	ABI	CRAMUS_MOUSE	f	SNP	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33557311					SNP	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:49780403 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15849	CpG island 15849	303 bp proximal
Gm71615	predicted gene, 71615	within coordinates