rs33557797 SNP Detail

Summary

• ID
  rs33557797
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:54076229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAA GTAAGAGAAT TGAATTGAAC
  K
  TGTTTGGAAT GCAAAGACTT CCCGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39550201	mCV22335502	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					G		T
ss62787599	NES17356801	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	G	T		T	T	T	G		G	G		T
ss145776144	ENSMUSSNP39626	ENSEMBL	ENSEMBL_Sanger	f	SNP			T							T
ss325420695	CHEV_17_53908526	CHEVERUD	SCREENING_POP	f	SNP													T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33557797					SNP	T	T	T	T	T	G	T	G	T	T	T	G	T	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62787599	NES17356801	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:54076229 () rs orientation: forward

Symbol	Name	Function Class
Tssr145231	transcription start site region 145231	620 bp upstream
Tssr145232	transcription start site region 145232	628 bp upstream
Tssr145233	transcription start site region 145233	656 bp upstream