rs33558162 SNP Detail

Summary

• ID
  rs33558162
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:87756212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATA GGAAAGCTCT TCCAGGTTTC
  K
  TAGGTTGGGT TTTGGTAACG CCTTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39550416	mCV24502134	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	G
ss146179921	ENSMUSSNP951202	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33558162					SNP	T	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:87756212 () rs orientation: forward

Symbol	Name	Function Class
Calm2	calmodulin 2	1849 bp upstream
Cpgi9626	CpG island 9626	1263 bp distal
Gm65472	predicted gene, 65472	563 bp downstream
Rr370330	regulatory region 370330	1863 bp downstream
Rr370331	regulatory region 370331	1543 bp downstream
Rr532696	regulatory region 532696	1939 bp distal
Rr532697	regulatory region 532697	1359 bp distal
Tssr146187	transcription start site region 146187	1546 bp downstream
Tssr149773	transcription start site region 149773	1915 bp upstream