rs33559397 SNP Detail

Summary

• ID
  rs33559397
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:117257854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAC GATCTTATCC ACGGTGGTCC
  K
  ACAAGACAAG ACAAGGCGTG GGGAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45793540	mCV23379611	ABI	CRAMUS_MOUSE	f	SNP	T	G	G
ss149148354	ENSMUSSNP897368	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		G
ss321658466	CHEV_5_117569798	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33559397					SNP	T	G	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:117257854 () rs orientation: forward

Symbol	Name	Function Class
9530046B11Rik	RIKEN cDNA 9530046B11 gene	1066 bp downstream
Cpgi16405	CpG island 16405	within coordinates
Gm57263	predicted gene, 57263	within coordinates
Rr378521	regulatory region 378521	1190 bp upstream
Rr399292	regulatory region 399292	52 bp upstream
Rr618570	regulatory region 618570	1733 bp distal
Rr618571	regulatory region 618571	497 bp distal
Rr618572	regulatory region 618572	within coordinates
Rr618573	regulatory region 618573	244 bp proximal
Rr618574	regulatory region 618574	351 bp proximal
Taok3	TAO kinase 3	340 bp upstream
Tssr48350	transcription start site region 48350	331 bp upstream
Tssr48351	transcription start site region 48351	396 bp upstream
Tssr52880	transcription start site region 52880	87 bp downstream