rs33560166 SNP Detail

Summary

• ID
  rs33560166
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:88827740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACTTCTT CATTCTCTTT
  CAACACTAAC CAAGGTAGCT GTGCTGAACA CAAAGGTAAT CTCACTTCTG ACCTAGTTCC
  TTATACAATG AATGTACAGA ATTCCACTGA AAAATAAAAC TACCCTGGCT TTTGTGTGAA
  TTTATTAGGA GGATTCATTA TCACACAAAA CCAAATGGGA GCTGAGACAA TTACAAAACA
  K
  TCAAAGCTCA TCATATGCTG TCAAAAACAG AATAATTCTG GCACTACTAG TTAAAGAAAG
  AGTAGTTGAC TTAAGTAATT TGATCAATGT AAATACATGA TGGTAAACTC ATTGTATAGT
  GCTGTACATA AAATATAATT CTAGTATTCA TTAAAGTATT GAATAATCAC CGTGCACTTA
  TTTGTAAAAA TAAATGGAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss48327169	NES12212975	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G	G	G	T		G	G	T
ss148510955	ENSMUSSNP4259435	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33560166					SNP	G	G	G	G	G	G	G	G	G	G	G	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48327169	NES12212975	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:88827740 () rs orientation: forward

Symbol	Name	Function Class
Krtap6-1	keratin associated protein 6-1	847 bp upstream