rs33560168 SNP Detail

Summary

• ID
  rs33560168
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:88827518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGGTCAC ATGCTCTGAA
  GTCCTGGAAC TCATGAGATT GTGGCGGTAT GATTTCATGT CTGAGGCTAT CATACTACTA
  AGAGACCATC AGCTGAGTGC AGACACACAT GCGCGTGCGC GCGCACACAC ACACAAACAC
  ACACACACAC ACACACACAC ACAATGTAAA TGAATATATA GCTGTGTTTG CTTTAAACAT
  Y
  AGTAGGAAAA TGCTCTGTTG GGAGACTTCT TCATTCTCTT TCAACACTAA CCAAGGTAGC
  TGTGCTGAAC ACAAAGGTAA TCTCACTTCT GACCTAGTTC CTTATACAAT GAATGTACAG
  AATTCCACTG AAAAATAAAA CTACCCTGGC TTTTGTGTGA ATTTATTAGG AGGATTCATT
  ATCACACAAA ACCAAATGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48327171	NES12212973	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33560168					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48327171	NES12212973	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:88827518 () rs orientation: forward

Symbol	Name	Function Class
Krtap6-1	keratin associated protein 6-1	1069 bp upstream