rs33560169 SNP Detail

Summary

• ID
  rs33560169
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:88827351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCAAAGCT GGAATACATA
  AGAGTTCGCT TCTCTTGTGG CCACCAGATA GATCTACATG AACAGAATTT AGCCTTTGAA
  TACACAGCAG CACAAGATCT ACCCCAACTA CAGTCTACCA AGATTCATTA TGAAAAAGAA
  TATTCAAAAT CCCATATTGA TTTGAGAATC TGGTCACATG CTCTGAAGTC CTGGAACTCA
  Y
  GAGATTGTGG CGGTATGATT TCATGTCTGA GGCTATCATA CTACTAAGAG ACCATCAGCT
  GAGTGCAGAC ACACATGCGC GTGCGCGCGC ACACACACAC AAACACACAC ACACACACAC
  ACACACACAA TGTAAATGAA TATATAGCTG TGTTTGCTTT AAACATTAGT AGGAAAATGC
  TCTGTTGGGA GACTTCTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48327172	NES12212972	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33560169					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48327172	NES12212972	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:88827351 () rs orientation: forward

Symbol	Name	Function Class
Krtap6-1	keratin associated protein 6-1	1236 bp upstream