rs33560454 SNP Detail

Summary

• ID
  rs33560454
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:169730897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACC CCTACCCCCT CCCCCACCCC
  M
  GTGGGTGACA GGGCGGTGTC TTGGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45293142	mCV22900741	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	A
ss148293422	ENSMUSSNP5018962	ENSEMBL	ENSEMBL_Sanger	f	SNP				A
ss320614472	CHEV_2_169714477	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33560454					SNP	A	A	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169730897 () rs orientation: forward

Symbol	Name	Function Class
Rr374253	regulatory region 374253	within coordinates
Tshz2	teashirt zinc finger family member 2	within coordinates
Tssr27898	transcription start site region 27898	937 bp upstream