rs33561603 SNP Detail

Summary

• ID
  rs33561603
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84851411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCCACCAAG CAGGGAGCAT GCTTGAGACC GACCTAGGTC
  CTCTGCATAT ATATATATAT TACTGTTGTG TAGTTTGGTC TTCTTGTGGG ACTCCTAACA
  M
  TGGAAGGAGG GGCTGCCTCT CACTCTTTTG TTGGCTTTAG GGACCCTGGT CCCCATACTG
  AGTTGTCTCC TCCAGCCTTA ATATGAGGGG AGATGCCTA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39551150	mCV24484105	ABI	CRAMUS_MOUSE	f	SNP	A	A	C
ss146139108	ENSMUSSNP1309623	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33561603					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84851411 () rs orientation: forward

Symbol	Name	Function Class
4930500A05Rik	RIKEN cDNA 4930500A05 gene	within coordinates
Plekhh2	pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	within coordinates
Tssr149687	transcription start site region 149687	722 bp upstream
Tssr149688	transcription start site region 149688	711 bp upstream