rs33562122 SNP Detail

Summary

• ID
  rs33562122
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:181300700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATCCCGACA CCACCGCTTC ATTCAGAAAA ACCTGACTGG
  AGCTGGTGGA GGTCAGGGAC AGCCAGGGAC CTCCTGTGAT GCCCAAAAGG TATGGGGAAG
  K
  TTCCCCCAAA CAACTATTTG TTTACTCCTC AGGCCCCACC CCCATGTCCC TCCCCTGCTC
  TGGCTTTCCT TCCTTTCCAA CTTAGGAGAG TAGCATCCT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss45293273	mCV22775664	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G	T
ss148402949	ENSMUSSNP4921200	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs33562122					SNP	G	G	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181300700 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12934	CpG island 12934	198 bp proximal
Gm29797	predicted gene, 29797	Intron
Gm74533	predicted gene, 74533	within coordinates
Rr573063	regulatory region 573063	456 bp proximal
Rr573064	regulatory region 573064	497 bp proximal
Rr573065	regulatory region 573065	814 bp proximal