rs33562483 SNP Detail

Summary

• ID
  rs33562483
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:88624812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAAGAATAT ATATGCTAAT TGATAGATAC ACAACATAAG
  CAACTCCAAA ATAATGTCTT CACATTTCCA TCTCACTTGA TACCTTTCCC TACCCATGTG
  M
  TGTACCTAAG GGTCATTTGT AACCATGAGT TCTAAGTCTT AAACCTTTCA TGACATTGAC
  ACAAGACAGA TATTCTTCAC ATTCTTTAAT AATGTTTAAA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48328209	NES12190175	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	C	C	A	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33562483					SNP	C	C	A	C	C	C	A	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48328209	NES12190175	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:88624812 () rs orientation: forward

Symbol	Name	Function Class
Krtap14	keratin associated protein 14	1779 bp upstream
Krtap15-1	keratin associated protein 15-1	1085 bp upstream
Tssr139247	transcription start site region 139247	1061 bp upstream
Tssr139248	transcription start site region 139248	1186 bp upstream
Tssr141971	transcription start site region 141971	1773 bp upstream