rs33562578 SNP Detail

Summary

• ID
  rs33562578
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121381152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAC TGAACTCCAA TCCCCCTGCC
  R
  TCACCAAACG CTGGGAATAC AGATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45293436	mCV24430179	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss147390421	ENSMUSSNP7242558	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320483661	CHEV_2_121376407	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33562578					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121381152 () rs orientation: forward

Symbol	Name	Function Class
Frmd5	FERM domain containing 5	within coordinates
Rr406973	regulatory region 406973	within coordinates
Rr563848	regulatory region 563848	670 bp proximal
Tssr25942	transcription start site region 25942	1050 bp upstream
Tssr25943	transcription start site region 25943	593 bp downstream
Tssr25944	transcription start site region 25944	606 bp downstream
Tssr25945	transcription start site region 25945	682 bp downstream
Tssr25946	transcription start site region 25946	712 bp downstream