rs33563820 SNP Detail

Summary

• ID
  rs33563820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:11228756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTTATGG GATACTCAGA
  GACATGGTCC CAGTAATTAT TTGAGCTGTG CCAAGGATGA ATGCTCTCTA TTACTGAATA
  TGATAGAATC CTCATGCCCC ATTTCTGAGG TAGCCTTTCC CCAAGCTGTG GAGCCCCATA
  GTCTCTGCTT CTTCTTTAAG GTGTCTCTTT GCAACCAACC TCAATGAGGA CAAGAGCTCC
  Y
  ACTCTGAGCC ATGGACATCG AACTCTGGTG GTGAGAAAGA TTCTGCTCCC ATACTTGCAA
  GGACTGCACT AGCCAACAAC CCCAGAGACC AGGCTTTCTC CCCACGTCCA GTCCTCCAGA
  CCTATGTATG CTTCCTTATG GGTCTCCCTG AGGATGACTC TGACCTTCTG CAGGGTTTGA
  GTCTACTCCC TTTACTTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46829149	NES10965261	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33563820					SNP	C	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46829149	NES10965261	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:11228756 () rs orientation: forward

Symbol	Name	Function Class
Gm39495	predicted gene, 39495	within coordinates
Rr5276	regulatory region 5276	1444 bp proximal