rs33563823 SNP Detail

Summary

• ID
  rs33563823
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:11229033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCCCAGA GACCAGGCTT
  TCTCCCCACG TCCAGTCCTC CAGACCTATG TATGCTTCCT TATGGGTCTC CCTGAGGATG
  ACTCTGACCT TCTGCAGGGT TTGAGTCTAC TCCCTTTACT TTGAAAATTC AAGGAAGACG
  TTAAGAACAT GGTGGGAACC AGAGCTTGGG AAAAGAGGGC AGCCCTGCAG GTATGTGAGA
  R
  CAGAGATATG TGAGAGCAGA GAGTGACTAC TTCCACTTCA CACAGGCAAA ATGGGCCTTC
  TGCGTTTTTG AAACACTCGG TGGGTATAGA GCTGCAGACT CTTGTTTTTG AGAATGAGGG
  AGGAAACCAA CAGAATCCAG AAGGTGGGGG TGGGTTTGGG ACCCTAATAA TATCTGCTAT
  AGATCTCATA CTGAGGAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46829152	NES10965262	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33563823					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46829152	NES10965262	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:11229033 () rs orientation: forward

Symbol	Name	Function Class
Gm39495	predicted gene, 39495	within coordinates
Rr5276	regulatory region 5276	1167 bp proximal