rs33564669 SNP Detail

Summary

• ID
  rs33564669
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:11229724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGACTCG GGATCCATCT
  GTCTCCACCT CCCAGACACT GTGATTATAG GCATTAAACT ACCATGCCCA GTTTGGGAGA
  GTTCTAGGAA TCTGAACTCA GGTCCTCATG TTCAAGCAAG AAGTACTTCA CCAACTAAGC
  CACTTCCCCA GAATCCCCCA AAAAGGCTTT TTAAAAGATT GTCTTGTATA GCCAGTGTCC
  Y
  AGTTTCACAC TGTTCCATTT AAAATGTTTT TTTTTTTCTC TAGAAAGATA TGTTTGGCAA
  CACTGGACCC CAAACTAAAT GATTCCTAAT GTCATATGGT TCTGGGAATC TAGAAACTTC
  CCATTTTCTG TCCAAGTAAA CTGGCCTAGG TGGGACACCA TTTATAGTCC CTTGGAAGAC
  TCTTTTTATC CCCCCCCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46829158	NES10965244	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33564669					SNP	C	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46829158	NES10965244	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:11229724 () rs orientation: forward

Symbol	Name	Function Class
Gm39495	predicted gene, 39495	within coordinates
Rr5276	regulatory region 5276	476 bp proximal
Rr9041	regulatory region 9041	1478 bp proximal