rs33564707 SNP Detail

Summary

• ID
  rs33564707
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:115286653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAGCTCC CAGAGGCCCA
  CAATAGGCAG GGACAGTGAT CTGACAGTTA AAACTTATTT CAAAGTCTTC GTCTTCCTTC
  TGATCCAGAT ACTGAAGGCT GCCCTACCAG GCTCTGGTTC CCAGCCTCAC CACACCTCTG
  TCCTAACTCC TAAGGAACCC AAGTAGAGCC TGGTGTACAG TGTCACCTTC CTAGAAGATC
  Y
  ATGTCAGCAC TGGGCGGGAG GGAAGGTGTT AGGACAAGAG GACGGGCAGA AGGTATGGCC
  CCACGCTTGA GAGCACTGGC TGCTCTTCCT CTTGGAAGAC CTCGGCTCGG TCCCCAGCAC
  CGAGCTGGTG GCTTACAGCC ACCATGGCAT AACCGCACTT CCAGTTTCTC TTCTGAGTTC
  TGAGAATACT ACACATGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45794303	mCV23012845	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss149121428	ENSMUSSNP6211424	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33564707					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115286653 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mlec	malectin			Intron
				Noncoding-Transcript-Variant
Rr618146	regulatory region 618146			876 bp distal
Rr618147	regulatory region 618147			596 bp proximal
Tssr48205	transcription start site region 48205			871 bp downstream
Tssr52756	transcription start site region 52756			707 bp upstream
Tssr52757	transcription start site region 52757			555 bp upstream
Tssr52758	transcription start site region 52758			520 bp upstream