rs33565043 SNP Detail

Summary

• ID
  rs33565043
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:154032591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGGAGCAG GGTCAAGATC ACCCACTATC AGTCCCCCAC
  TTCTCAGTGA TGAACTTGGC TTGCCTTTGT CTAGGGGTTG GACTCCCTAG TGCCTCTTTC
  Y
  CCTGGATGAC CTGGTGACGG AATGAGTAAA TGTTAGCTCA GGAACCCAAC CCTGTAAAGG
  GGTCATGAGG GAGGTTCCCC TGTGTACCCC TGCTGGCCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45294501	mCV23868180	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss320569691	CHEV_2_154016407	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33565043					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154032591 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	147 bp upstream
Rr567774	regulatory region 567774	within coordinates
Rr567775	regulatory region 567775	158 bp proximal
Rr567776	regulatory region 567776	384 bp proximal
Rr567777	regulatory region 567777	1519 bp proximal
Tssr20971	transcription start site region 20971	78 bp upstream
Tssr20972	transcription start site region 20972	92 bp upstream
Tssr20973	transcription start site region 20973	105 bp upstream
Tssr20974	transcription start site region 20974	135 bp upstream
Tssr20975	transcription start site region 20975	162 bp upstream
Tssr20976	transcription start site region 20976	597 bp upstream