rs33567254 SNP Detail

Summary

• ID
  rs33567254
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:11311200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTAAGCAC TCTAGGTTAC
  TGCTACCATG TAAGCCCCAG GACCAGCTAT GTCTTGCTCC TGGAGAAGGC GGTCATCATG
  GCTACCTGAT CCTCTCTAGG AGACTAGAAG ATGGATCTAG CTCTTTCTCA TGTTCTAGGC
  TTCAGGGAGG ACTGTCTTAT TAGCAGAGAT ACACCTGGGT AAATGGAGAC TCGTTTCTGC
  Y
  AGATGTTTTA CAATGACAGT AGCCATAGTG CAGCCCTCAA GTGAAGGTGT ATGCACTTCT
  GTTCATGGAA ACTTGGACAA CAGGTTGGAT CATTAAGCAT TTGATAAACA GTAAATTGAG
  GAAGATGCCC AAGATGGGCA GTGAACTTGG ATTCCAAGCT GGGTTCTGTC AACAGCAGCA
  GTGTGGCCTA ATGCTGTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46829752	NES10963290	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33567254					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46829752	NES10963290	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:11311200 () rs orientation: forward

Symbol	Name	Function Class
Rr2650	regulatory region 2650	1000 bp distal
Rr9046	regulatory region 9046	1 bp distal