rs33568361 SNP Detail

Summary

• ID
  rs33568361
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31278220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAC CTTTATCTAG TTGACTCTAC
  M
  TGGAGGCTTG GTTAACACTG AAAAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39552240	mCV24388720	ABI	CRAMUS_MOUSE	f	SNP	C	A	C	C
ss145455235	ENSMUSSNP5499970	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		C
ss325358447	CHEV_17_31196191	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33568361					SNP	C	A	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31278220 () rs orientation: forward

Symbol	Name	Function Class
Abcg1	ATP binding cassette subfamily G member 1	within coordinates
Cpgi8940	CpG island 8940	885 bp distal
Gm55872	predicted gene, 55872	358 bp upstream
Rr525355	regulatory region 525355	1509 bp distal
Rr525356	regulatory region 525356	within coordinates
Rr525357	regulatory region 525357	1162 bp distal
Rr525358	regulatory region 525358	962 bp distal
Rr525359	regulatory region 525359	1010 bp proximal
Tssr143637	transcription start site region 143637	1547 bp downstream
Tssr143638	transcription start site region 143638	1533 bp downstream
Tssr143639	transcription start site region 143639	1512 bp downstream
Tssr143640	transcription start site region 143640	1497 bp downstream
Tssr143641	transcription start site region 143641	1468 bp downstream