rs33569559 SNP Detail

Summary

• ID
  rs33569559
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:47984778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTG ACAGGATTTA TCACCTGCTT
  Y
  TTTAAACAGT GATCGCCATC ATCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46291904	mCV24781809	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss60607595	NES16308500	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		C	T	C	C		C	T	C	C		C
ss322655763	CHEV_8_48617097	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33569559					SNP	C	C	T	T	T	C	T	T	C	T	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60607595	NES16308500	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:47984778 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20329	CpG island 20329	1337 bp proximal
Rr186609	regulatory region 186609	422 bp proximal
Rr368533	regulatory region 368533	1951 bp upstream
Rr400846	regulatory region 400846	1647 bp upstream
Rwdd4a	RWD domain containing 4A	1902 bp upstream
Trappc11	trafficking protein particle complex 11	within coordinates
Tssr77336	transcription start site region 77336	1896 bp upstream
Tssr81236	transcription start site region 81236	1662 bp downstream
Tssr81237	transcription start site region 81237	1679 bp downstream
Tssr81238	transcription start site region 81238	1696 bp downstream