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rs33570279 SNP Detail
Summary
  • ID
    rs33570279
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr17:3621317 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCAGCTGTTG TCAAAAACGT
    AGGTGTCATG AATATTGGTC TTAGTGTGGC ATCTTGGGCC CGATTACAAA GGCAAGTGTA
    GTTTACTTTC TGTAGTTTAC TTTTCTGCAA AGTGCCGGGA CAGGGCGGTA CCTTCTTTAA
    GGACATTTCT GTTCTTTAGA GAAATGATAT GAAAAGCCGA AGGGAAAAAT CTGGAAGGAT
    R
    CAGAGAGGGA AGCCCATTTT AGCCACTGGG TGGCGATATT GTCCCACGTC GTGGAAGGTT
    TTTTTGTCCC ATTCGCCATT CGCCAACCGT TCCAAACTTT GAATTAACTA AGCATAGTCA
    AGGAAGATTT TCAAAAGGGA GCTGAAATAA AAGCAGGTCG GCAGAAAACC ACAATTACAG
    GGGAATGACA GTAAAGGGCA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
ss39551700 mCV22963889 ABI CRAMUS_MOUSE f SNP G A G G
ss145044567 ENSMUSSNP5544384 ENSEMBL ENSEMBL_Sanger f SNP G A G
ss325286858 CHEV_17_3571042 CHEVERUD SCREENING_POP f SNP A A
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
rs33570279 SNP G A G G A A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:3621317 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm34155 predicted gene, 34155 within coordinates
Gm65020 predicted gene, 65020 9 bp upstream
Rr331141 regulatory region 331141 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory