rs33570382 SNP Detail

Summary

• ID
  rs33570382
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:12849730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAATTAAT AAATGGGCTA
  ATGAACTGTC TGCTCTTCCA GGGGACCGGA GTGTGATCTC CAGCTCCTAC ATGGAAAAAA
  ATAAACAGAA ATAAAAAAGA AAAAGAAGAA ATCTCAAATT AAAAAAACCA AATTTTTTAG
  AACTTTATTT ATTTTCCCAC TCATGATTCT CATGAAGTTT AGAAAATGAA TGGAAGACAT
  Y
  ATATTATTTT GGAGTTGGTT AAATTTCACC CTTGTCTACA GTTCTGGAAA TTATACCATT
  TTAAATTTTA ACAAAATTTT AACAAAAGTT TCAATAAATG AAAACATTCT CTTGGTGTAT
  TTGCACATTG TAAGAGGTGT AAAGTTGACC ATGTTCTGGT TGTTCTGGGA AACAAACAGA
  ACAACAGTTT TCTTTGGACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47814743	NES11970855	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33570382					SNP	T	T	T	T	T	T	C	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47814743	NES11970855	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:12849730 () rs orientation: forward

Symbol	Name	Function Class
Tssr92372	transcription start site region 92372	819 bp upstream
Tssr92373	transcription start site region 92373	1717 bp upstream
Tssr96740	transcription start site region 96740	696 bp downstream
Tssr96741	transcription start site region 96741	1609 bp downstream