rs33570559 SNP Detail

Summary

• ID
  rs33570559
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84926842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGG GCCAAGTAGC AGTCCAACAT
  R
  CCCAAGGAGG TTGGCGTGGC CACAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46291576	mCV24182207	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss145374884	ENSMUSSNP6720389	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss322748102	CHEV_8_86724112	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33570559					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84926842 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20682	CpG island 20682	1401 bp distal
Cpgi20683	CpG island 20683	within coordinates
Gm26887	predicted gene, 26887	1489 bp upstream
Gm37352	predicted gene, 37352	656 bp upstream
Gm56830	predicted gene, 56830	1628 bp upstream
Gm56836	predicted gene, 56836	1015 bp downstream
Gm64014	predicted gene, 64014	within coordinates
Gm64130	predicted gene, 64130	924 bp downstream
Gm65345	predicted gene, 65345	731 bp upstream
Rr186982	regulatory region 186982	1041 bp distal
Rr186983	regulatory region 186983	within coordinates
Tssr2624	transcription start site region 2624	1427 bp downstream
Tssr78372	transcription start site region 78372	622 bp upstream
Tssr78373	transcription start site region 78373	647 bp upstream
Tssr78374	transcription start site region 78374	718 bp upstream
Tssr78375	transcription start site region 78375	1553 bp upstream
Tssr82079	transcription start site region 82079	1849 bp upstream
Tssr82080	transcription start site region 82080	1819 bp upstream
Tssr82081	transcription start site region 82081	1790 bp upstream
Tssr82082	transcription start site region 82082	404 bp downstream
Tssr82083	transcription start site region 82083	517 bp downstream
Tssr82084	transcription start site region 82084	1411 bp downstream
Tssr82085	transcription start site region 82085	1748 bp downstream
Tssr82086	transcription start site region 82086	1770 bp downstream
Tssr82087	transcription start site region 82087	1799 bp downstream