rs33570854 SNP Detail

Summary

• ID
  rs33570854
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:74111075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTCTCTCA GCTCATCCTT GAAGAGACAT CTCACAGCCA
  TGTTTCCTGT AATGCCTTCA AATTGACCAC GAAAAAAGCA AAAGATGGTT CTGCTTGCTT
  R
  CTTGCTTTTT TTTTTATTCT TATTTTTATT TAATTTAATT TTTTTTTTTT TTTGAGACAG
  GGTTTCTCTG TGTAGCCCTG GCTATCCTGG AACTCGCTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39551592	mCV25306115	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G	A
ss145938489	ENSMUSSNP5071375	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33570854					SNP	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:74111075 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9490	CpG island 9490	596 bp proximal
Ehd3	EH-domain containing 3	761 bp upstream
Rr530824	regulatory region 530824	271 bp proximal
Rr530825	regulatory region 530825	560 bp proximal
Tssr145810	transcription start site region 145810	748 bp upstream
Tssr145811	transcription start site region 145811	774 bp upstream
Tssr145812	transcription start site region 145812	803 bp upstream
Tssr145813	transcription start site region 145813	822 bp upstream
Tssr145814	transcription start site region 145814	865 bp upstream