rs33570905 SNP Detail

Summary

• ID
  rs33570905
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167893813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTGACCA AATGGAGGTT
  TCCAAGTCAC TTGGTTTAGC TGATGAGTCT CTTCTTTGCG GTATGGTATG GAGGCTTGAA
  CCCAGAGCCT CCTTCACAGA CAGCCCCTGC CCCCACTCCA CCCCCTTCTT TTCCCTTCTG
  AGGCCAGGAT CTCACCTGGC TGCTCAGACC AGCCTCAAAC CCTTAAACCT CAGGCTCACT
  S
  AGTTCTGGTT GAGCTTGAAC TTGTGCTTCT GCCTCAGCCT CTGGACTAGC AAATGTCAGG
  AGTTCCAGGA CTATAGTGCC AAGCTCCACC CCCACTTTAT ATTCTTTACA CAGGGGTCTT
  AAACCAGGCA AGGCAATTAG CACATCTAAT CCCAGCACAC ATGAAGCTAG GCAGGAAGAC
  CAGAGTTCAA GACCAGCGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45294179	mCV22943476	ABI	CRAMUS_MOUSE	f	SNP	G	C	C	C
ss148265675	ENSMUSSNP1153532	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33570905					SNP	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167893813 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12760	CpG island 12760	983 bp distal
Gm57439	predicted gene, 57439	1466 bp upstream
Rr406967	regulatory region 406967	1023 bp distal
Rr570860	regulatory region 570860	1537 bp distal
Rr570861	regulatory region 570861	1680 bp distal
Rr570862	regulatory region 570862	978 bp distal
Rr570863	regulatory region 570863	884 bp proximal
Rr570864	regulatory region 570864	981 bp proximal
Tssr27820	transcription start site region 27820	1812 bp upstream
Tssr27821	transcription start site region 27821	1529 bp upstream
Tssr27822	transcription start site region 27822	1493 bp upstream
Tssr27823	transcription start site region 27823	1465 bp upstream
Tssr27824	transcription start site region 27824	53 bp downstream