rs33571186 SNP Detail

Summary

• ID
  rs33571186
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:78701275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTTGCTG GCTTAACTTC
  AGTGGCAATA GTTCAGAAAT AGTTCTCCAT CAAACGTATG TGAACTTGAG TGGGCTGTCA
  TTCTGTGTGT GGTATAGCCA CGCAGTTTCC CTGCAACTAT CGACTCTAAA GCCAGCAGAC
  TTTGTTCTGT GCTGTGGTGA CTCGAGGATG GCCTCAAGAA GAGCTGGGCA CTCATTCTGA
  S
  AGATGAAGGG CTTGGCAAGG GAAATCTGGT GAGTCCCAGT GAAATGGCTT GTAGGAGAGG
  TTTCCTTCTG TGAGTCATGT GTGAGTGAAG TTGACAGTTC TAGAGATCAG CAGAGCTTCT
  CTCCAGAAAA CGGAATTGTC AGAAATAACA ATATTTACCA GAAAATTGGT AAACTCCAGG
  CTTGGCTCTA GTGGGAAGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45294377	mCV25372914	ABI	CRAMUS_MOUSE	f	SNP	G	C	C	C
ss146781689	ENSMUSSNP6104181	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33571186					SNP	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:78701275 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11839	CpG island 11839			976 bp distal
Rr559887	regulatory region 559887			1874 bp distal
Rr559888	regulatory region 559888			1999 bp distal
Rr559889	regulatory region 559889			1243 bp distal
Rr559890	regulatory region 559890			1716 bp distal
Rr559891	regulatory region 559891			1076 bp proximal
Tssr18523	transcription start site region 18523			1822 bp downstream
Tssr18524	transcription start site region 18524			1789 bp downstream
Tssr18525	transcription start site region 18525			1768 bp downstream
Tssr18526	transcription start site region 18526			1669 bp downstream
Tssr18527	transcription start site region 18527			1610 bp downstream
Tssr18528	transcription start site region 18528			1555 bp downstream
Tssr18529	transcription start site region 18529			1420 bp downstream
Tssr18530	transcription start site region 18530			1469 bp upstream
Ube2e3	ubiquitin-conjugating enzyme E2E 3			Intron
				Noncoding-Transcript-Variant