rs33571238 SNP Detail

Summary

• ID
  rs33571238
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:12850972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTTTGTT TGTTTGTTTT
  TTGAGACAGG GTTTCTCTGT GTAGCTTTGG CTGTCCTGGA ATTCTCTGTA TAACATGCCA
  GCTTTGTACT CATAGAGATC CACCTGCCTC TGACTCCCAA GTGCTGGAAT TGAAGGAGTG
  AGCCACCACT GCCCAGCAAA AGCCCATATT CTTACAGACT GATAAAGAAT AACTTTCAGT
  S
  AAGAGAAGTC AGATCTTCCT TAAGTGGATT TCAAATGGCA GTTATTTATC CTCTGAGAGT
  GTCATTTTTA TAAACAGACA AAACATCCTT ACATTCATAT CCTTTGATCA TTTTGGGTCA
  ATCCCTGACT CTAGTTTAGA AAAGATGTAC TTCCACACCA GAAAGCCTTA TGTCGAGTTT
  GAGCACTGGT TTCTTCTCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47814749	NES11970786	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33571238					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47814749	NES11970786	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:12850972 () rs orientation: forward

Symbol	Name	Function Class
Rr427711	regulatory region 427711	1769 bp proximal
Tssr92372	transcription start site region 92372	409 bp downstream
Tssr92373	transcription start site region 92373	475 bp upstream
Tssr92374	transcription start site region 92374	1001 bp upstream
Tssr92375	transcription start site region 92375	1090 bp upstream
Tssr96740	transcription start site region 96740	519 bp upstream
Tssr96741	transcription start site region 96741	367 bp downstream