rs33571240 SNP Detail

Summary

• ID
  rs33571240
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:12851089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTGCTGG AATTGAAGGA
  GTGAGCCACC ACTGCCCAGC AAAAGCCCAT ATTCTTACAG ACTGATAAAG AATAACTTTC
  AGTGAAGAGA AGTCAGATCT TCCTTAAGTG GATTTCAAAT GGCAGTTATT TATCCTCTGA
  GAGTGTCATT TTTATAAACA GACAAAACAT CCTTACATTC ATATCCTTTG ATCATTTTGG
  K
  TCAATCCCTG ACTCTAGTTT AGAAAAGATG TACTTCCACA CCAGAAAGCC TTATGTCGAG
  TTTGAGCACT GGTTTCTTCT CTTGCTTCTC CTCGTCCCCC TGCTGAAGTT CTAGGAGTTT
  AGTTGTCCCA TTTTCCCCTT TAGTACACTC CTCAGACAAA AATATTCTTT CTCTGCTGAG
  GGCTTCTAGC TGCTGTGAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47814751	NES11970789	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33571240					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47814751	NES11970789	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:12851089 () rs orientation: forward

Symbol	Name	Function Class
Tssr92372	transcription start site region 92372	526 bp downstream
Tssr92373	transcription start site region 92373	358 bp upstream
Tssr92374	transcription start site region 92374	884 bp upstream
Tssr92375	transcription start site region 92375	973 bp upstream
Tssr96740	transcription start site region 96740	636 bp upstream
Tssr96741	transcription start site region 96741	250 bp downstream