rs33571467 SNP Detail

Summary

• ID
  rs33571467
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:98180740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATGGTGT CTACAGCTAA
  AGGGTCTTGA CATCAAGTTC CGGTAGGCAA CCAAGAGTAA TGGTAATAGC CTGTATTGAT
  TTTGGGACAC CTGTGATCAA CAACTTAAAG GAAGGTTATC CCACACCCCA CTGGGCTTTT
  AATTTGCATC TCTCCCAGCC AAGACAAAGC TAGGAGCCAG TGATCACTTC GGTAGCAATG
  R
  AAAATCACAC CTGGAAATAT CTAGTCCCAC TCTCCCTGAG CCCAGTTATC ACGGGTTTCA
  CCTTGAAAAG GCTAAGTAGT GGAGGAGATA AAGCCAGGTA ACTTGTAAGC ATTGTGCAAT
  GTGTACATTA ATATGTACAA TTTTATGGTT ACGTATGACT CAAAGAACAA ACTGAATCAC
  AATAAGACTT CATCCGGCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss45795036	mCV25003289	ABI	CRAMUS_MOUSE	f	SNP		A	G				G
ss61199537	NES16709211	PERLEGEN	MM_PANEL2	f	SNP	G			A	A	G		A	A	A	G
ss148904982	ENSMUSSNP4763674	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs33571467					SNP	G	A	G	A	A	G	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61199537	NES16709211	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:98180740 () rs orientation: forward

Symbol	Name	Function Class
Antxr2	anthrax toxin receptor 2	1864 bp upstream
Cpgi16083	CpG island 16083	1321 bp distal
Gm42759	predicted gene 42759	1244 bp downstream
Rr615103	regulatory region 615103	1348 bp distal
Rr615104	regulatory region 615104	46 bp proximal
Tssr1554	transcription start site region 1554	1919 bp upstream
Tssr47435	transcription start site region 47435	1771 bp downstream
Tssr47436	transcription start site region 47436	1592 bp downstream
Tssr47437	transcription start site region 47437	1571 bp downstream
Tssr47438	transcription start site region 47438	419 bp upstream
Tssr51993	transcription start site region 51993	1889 bp upstream
Tssr51994	transcription start site region 51994	1843 bp upstream
Tssr51995	transcription start site region 51995	1627 bp upstream
Tssr51996	transcription start site region 51996	1565 bp upstream
Tssr51997	transcription start site region 51997	1534 bp upstream
Tssr51998	transcription start site region 51998	1493 bp upstream
Tssr51999	transcription start site region 51999	1460 bp upstream
Tssr52000	transcription start site region 52000	1432 bp upstream
Tssr52001	transcription start site region 52001	1418 bp upstream
Tssr52002	transcription start site region 52002	1394 bp upstream
Tssr52003	transcription start site region 52003	1358 bp upstream