rs33571977 SNP Detail

Summary

• ID
  rs33571977
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84131485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAATCTGTCC CCAGGGTTGA ATGCTCTGCT CTGTCTCACC
  AACCACATCC TGAGAGCGTG GTGGTTTCAG GAAGCCATGC CCCCAAATAT GTGCCTCTGA
  Y
  TTTGTGCCAT CTAGGCTTTG GGTGAGAGCA ACAGGCGCAC CTCGCCCCAT TAGTCACGCA
  CAGGGCCACT CTGGCCAGCG CTGAACCCTG GGAACCCAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss39551811	mCV22837399	ABI	CRAMUS_MOUSE	f	SNP	C	C	C				C	T
ss60283482	NES15790218	PERLEGEN	MM_PANEL2	f	SNP			C	C	C	C		T	C	C	C	C	C
ss146121731	ENSMUSSNP4306592	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33571977					SNP	C	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60283482	NES15790218	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84131485 () rs orientation: forward

Symbol	Name	Function Class
Gm41637	predicted gene, 41637	1469 bp downstream
Rr531870	regulatory region 531870	within coordinates