rs33571979 SNP Detail

Summary

• ID
  rs33571979
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88748461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTCTGGC CCGGCCCGGC
  CCTCGCCTCT GGTTCGCGGC GGCTGAGTGA CGGTGAGTCC CCGGGGTCGC GCGGCGCGGC
  GCGGCGCGGA GGCAGCGTGT GCGGCCGGCG CTGGGCGTGG GGGCGCGGAG GCGGCTGTCC
  CGTGACGCGC CGGGACATTT TTGTGTCCCG GGAAGAATTG GCGCCCCTGC GCGGGGGTGT
  W
  CCCGGCGCGC GGCTCCGGCA GAGCGTGGGC TGCCCCGGGG GTGTGGAACC GAGGCGAGCA
  CGGGTCCCCG GGAGTGAGGA GTTAGGAGTT TTCTCCCGAG GTAATGACCG TACCGGAGGG
  GGCGTCGCGC AGTCGGAGCC ACAGAGGGCA GAGGACGCCC AGGCGGAAAC CTGCGACCCC
  GGGAGTTGCT GCTCTAAGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss39551813	mCV24691988	ABI	CRAMUS_MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs33571979					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88748461 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9640	CpG island 9640	within coordinates
Foxn2	forkhead box N2	within coordinates
Rr340320	regulatory region 340320	within coordinates
Rr405533	regulatory region 405533	369 bp downstream
Tssr146228	transcription start site region 146228	292 bp downstream
Tssr146229	transcription start site region 146229	246 bp downstream
Tssr146230	transcription start site region 146230	38 bp upstream
Tssr146231	transcription start site region 146231	491 bp upstream
Tssr149806	transcription start site region 149806	787 bp downstream