rs33572006 SNP Detail

Summary

• ID
  rs33572006
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:11309102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGCTGGT AGGCGTGAAG
  GCTGGGGTAG GGGTACTGTT CTTTGAAGTC CTCAAGAACG TCCTAGGTGA CATGGCAGGT
  GGGTCAAAGT GAGAGTCAGT GTATGGGCGG GCTAGCACAG AAATAGGCTG GTGTACTTCT
  GGGAACTGGA TGGAAGCAGG TGATAACGGA CTCTGATGGT TCTCAGCACT GGCAGAAATG
  R
  TGGCAACAGA AATGAAGGAG CATTTAGGCA ACTGAAAGTG ACCACAGGCT GAGGCCAGAG
  CTGTGGATTC CAGGATCTTG GAGGTACCGA GAGAAAGGAC GAAGGTTGAG AACCAGATGT
  ATATACCTAT AGGGGATGAA GTAAGGGATG TGACTTGAAA AACAGATCCA AAATGCTCTG
  CTGAACTCAA GATAGTTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46829713	NES10963322	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33572006					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46829713	NES10963322	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:11309102 () rs orientation: forward

Symbol	Name	Function Class
Rr2650	regulatory region 2650	699 bp proximal
Rr9046	regulatory region 9046	700 bp proximal