rs33572078 SNP Detail

Summary

• ID
  rs33572078
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:12851743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGGAGCT AAAGGCAGGA
  AGATCAGGAG TTCCTTGATG ACCCTGTCAG TTCAAGGCCA AACTAGGCTG AAGGGAACCC
  CACCTTAAAA AGCCAAGCAA ATACATAAGG GAAAAGATTG ACGCCTGCGT GGAGAACGCA
  CAGAGGGAAG AGGTGGGTTT TTCCAATGAG GACATGGCTT TAGGGATAGC ATGACACTCT
  S
  GCCCAGGATA AGCTCTCCAT CACTCTCCTG GGTCTGTAGC CCCTTTCCTT ACTCAGTTGG
  GAAGTTGAAA AGGACTCTGC GGTGACCTTG CACCATCGTA AGTTGAAAGC TAGCAACAGC
  AGGGGATTAC CTCAAACCCT GTGTCCTCCA CGTCGGTGGT GAGCAAAGGT GAATTAAGAA
  ACAGGACATT GCCACACAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47814759	NES11970713	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33572078					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47814759	NES11970713	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:12851743 () rs orientation: forward

Symbol	Name	Function Class
Rr427711	regulatory region 427711	998 bp proximal
Rr427712	regulatory region 427712	1910 bp proximal
Tssr92372	transcription start site region 92372	1180 bp downstream
Tssr92373	transcription start site region 92373	285 bp downstream
Tssr92374	transcription start site region 92374	230 bp upstream
Tssr92375	transcription start site region 92375	319 bp upstream
Tssr96740	transcription start site region 96740	1290 bp upstream
Tssr96741	transcription start site region 96741	395 bp upstream