rs33572743 SNP Detail

Summary

• ID
  rs33572743
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17691625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGCACTATT GGTATATATT TCATTCAGTC TATACCAGGT
  CCCTTTGGAA TAGGAACAAA GGAATCCACA GTACAGATGA ATAAACTGTG TAGCTCAAGG
  R
  CCATTAGCAA CTTTCAAGAA GCATCCCACT AGTGATTGGC AAAATCATGA ATAAAGCCCT
  ATACCTAGTA GGCCTATGCT GTAATGGCCC ACTACTAGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss47814774	NES11714493	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	G	A		G	G		G		G
ss133020575	ENSMUSSNP6207820	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G						A
ss321756030	CHEV_6_17641626	CHEVERUD	SCREENING_POP	f	SNP											G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs33572743					SNP	A	G	G	G	G	G	A	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47814774	NES11714493	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17691625 () rs orientation: forward

Symbol	Name	Function Class
Gm55211	predicted gene, 55211	1800 bp upstream
Rr626833	regulatory region 626833	577 bp proximal
Rr626834	regulatory region 626834	1951 bp proximal
St7	suppression of tumorigenicity 7	1954 bp upstream
Tssr55085	transcription start site region 55085	1981 bp upstream