rs33573348 SNP Detail

Summary

• ID
  rs33573348
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:81773285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTAGAGAA TATTTAGGTC
  TTTGGTTCCA AATGATGCCC AAAATTTTCC AAGAAGATTT AAAACCAACT ACACACAGCT
  GGGGACGTAG TTCTGGGGAC CTAGTTCAGT GGATAGCTGA CCTGACATTC AGGAAGCCTT
  GGGTTCCATC CCAGCACTGC ATATACTGGA AATTGTGGTA CGGGCTTATA ATCCCAGCAC
  Y
  CAGGAGGTAG AGGCAGCATG ATCAGAAGTT CACGCTCAAC CTCCCGTCTA CAGTGAGGGT
  AGGAATAGCT TGAGCTTCTT GAACCCTCAT CACAACAAAC ACAAACACAA ACACAAGCAC
  AAGATGCCTT TGCCTTTTCT TGGCCTCAGA ACCTTGGTTA TGTAGGTGAA AGGTGAGCAA
  GCGAAAGCAA ATCTCTGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39552736	mCV24670093	ABI	CRAMUS_MOUSE	f	SNP	T		C	C	C
ss146083798	ENSMUSSNP996851	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33573348					SNP	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81773285 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Slc8a1	solute carrier family 8 (sodium/calcium exchanger), member 1			Intron
				Noncoding-Transcript-Variant
Tssr149528	transcription start site region 149528			218 bp upstream