rs33573415 SNP Detail

Summary

• ID
  rs33573415
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17691629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGAGGTGA GGGAAACTAA
  AATTAACCAC AAGTTGCTTC ACACTAACGG CCCTACTTTA CTGGCAGAGA AAAGCGTGGC
  GTGTGCAGGT CATGCATAGC ACTATTGGTA TATATTTCAT TCAGTCTATA CCAGGTCCCT
  TTGGAATAGG AACAAAGGAA TCCACAGTAC AGATGAATAA ACTGTGTAGC TCAAGGGCCA
  Y
  TAGCAACTTT CAAGAAGCAT CCCACTAGTG ATTGGCAAAA TCATGAATAA AGCCCTATAC
  CTAGTAGGCC TATGCTGTAA TGGCCCACTA CTAGCCTCCT GGTGCTGCAT CTTTCAGAAA
  AGGATGAGTG GTGTGATGGT CTGATGGAAT TGGTGTGTCA AAAGAGGTCG TACATCAATG
  GAATCTCTGA AAAATCTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47814776	NES11714494	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	T	T		T	T	C	C	T	C	T
ss133020578	ENSMUSSNP550789	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T						T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33573415					SNP	C	T	T	T	T	T	T	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47814776	NES11714494	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17691629 () rs orientation: forward

Symbol	Name	Function Class
Gm55211	predicted gene, 55211	1796 bp upstream
Rr626833	regulatory region 626833	573 bp proximal
Rr626834	regulatory region 626834	1947 bp proximal
St7	suppression of tumorigenicity 7	1950 bp upstream
Tssr55085	transcription start site region 55085	1977 bp upstream