rs33573419 SNP Detail

Summary

• ID
  rs33573419
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17691784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAATCCAC AGTACAGATG
  AATAAACTGT GTAGCTCAAG GGCCATTAGC AACTTTCAAG AAGCATCCCA CTAGTGATTG
  GCAAAATCAT GAATAAAGCC CTATACCTAG TAGGCCTATG CTGTAATGGC CCACTACTAG
  CCTCCTGGTG CTGCATCTTT CAGAAAAGGA TGAGTGGTGT GATGGTCTGA TGGAATTGGT
  R
  TGTCAAAAGA GGTCGTACAT CAATGGAATC TCTGAAAAAT CTGCTAATAG GAACATGTTG
  CCTGGCTGGG AAGGGCAGCC AGAGAAATAT ATGACAGGTA GTATGGAGCA GGAGGACAAA
  AGTGCCCGGC AAAATACTAT ATGCCATCTA CATATCATTT TTAGATAGAT GATGATGAGG
  TGGTGGTAGT AAAATTGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47814780	NES11714496	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33573419					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47814780	NES11714496	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17691784 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	1890 bp proximal
Gm55211	predicted gene, 55211	1641 bp upstream
Rr626833	regulatory region 626833	418 bp proximal
Rr626834	regulatory region 626834	1792 bp proximal
St7	suppression of tumorigenicity 7	1795 bp upstream
Tssr55085	transcription start site region 55085	1822 bp upstream